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Class: Synthesis

A DataGeneratingActivity in which a catalyst is prepared.

__

The preparation protocol is linked via realized_plan using a

PreparationMethod instance. Input materials (Precursors) are linked via

had_input_entity. The resulting catalyst (CatalystSample) is linked via

had_output_entity.

__

The type of synthesis is further specified via rdf_type using an ontology

term (e.g. a VOC4CAT preparation method term), following DCAT-AP-PLUS

Pattern 3.

URI: OBI:0000070

 classDiagram
    class Synthesis
    click Synthesis href "../../classes/Synthesis/"
      DataGeneratingActivity <|-- Synthesis
        click DataGeneratingActivity href "../../classes/DataGeneratingActivity/"

      Synthesis : carried_out_by





        Synthesis --> "* _recommended_" Device : carried_out_by
        click Device href "../../classes/Device/"



      Synthesis : catalyst_measured_properties

      Synthesis : catalyst_support

      Synthesis : description

      Synthesis : evaluated_activity





        Synthesis --> "* _recommended_" EvaluatedActivity : evaluated_activity
        click EvaluatedActivity href "../../classes/EvaluatedActivity/"



      Synthesis : evaluated_entity





        Synthesis --> "* _recommended_" EvaluatedEntity : evaluated_entity
        click EvaluatedEntity href "../../classes/EvaluatedEntity/"



      Synthesis : had_input_activity





        Synthesis --> "* _recommended_" Activity : had_input_activity
        click Activity href "../../classes/Activity/"



      Synthesis : had_input_entity





        Synthesis --> "1..* _recommended_" Precursor : had_input_entity
        click Precursor href "../../classes/Precursor/"



      Synthesis : had_output_entity





        Synthesis --> "* _recommended_" CatalystSample : had_output_entity
        click CatalystSample href "../../classes/CatalystSample/"



      Synthesis : has_part





        Synthesis --> "*" Activity : has_part
        click Activity href "../../classes/Activity/"



      Synthesis : has_qualitative_attribute





        Synthesis --> "* _recommended_" QualitativeAttribute : has_qualitative_attribute
        click QualitativeAttribute href "../../classes/QualitativeAttribute/"



      Synthesis : has_quantitative_attribute





        Synthesis --> "* _recommended_" QuantitativeAttribute : has_quantitative_attribute
        click QuantitativeAttribute href "../../classes/QuantitativeAttribute/"



      Synthesis : has_sample_pretreatment





        Synthesis --> "* _recommended_" SamplePretreatment : has_sample_pretreatment
        click SamplePretreatment href "../../classes/SamplePretreatment/"



      Synthesis : id

      Synthesis : nominal_composition

      Synthesis : occurred_in





        Synthesis --> "0..1" Surrounding : occurred_in
        click Surrounding href "../../classes/Surrounding/"



      Synthesis : other_identifier





        Synthesis --> "*" Identifier : other_identifier
        click Identifier href "../../classes/Identifier/"



      Synthesis : part_of





        Synthesis --> "*" Activity : part_of
        click Activity href "../../classes/Activity/"



      Synthesis : rdf_type





        Synthesis --> "0..1 _recommended_" DefinedTerm : rdf_type
        click DefinedTerm href "../../classes/DefinedTerm/"



      Synthesis : realized_plan





        Synthesis --> "1" PreparationMethod : realized_plan
        click PreparationMethod href "../../classes/PreparationMethod/"



      Synthesis : solvent





        Synthesis --> "*" ChemicalEntity : solvent
        click ChemicalEntity href "../../classes/ChemicalEntity/"



      Synthesis : storage_conditions

      Synthesis : title

      Synthesis : type





        Synthesis --> "0..1" DefinedTerm : type
        click DefinedTerm href "../../classes/DefinedTerm/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
nominal_composition 1..*
String		 Nominal elemental or chemical composition of the catalyst (e.g. 5wt% Pt/Al2O3). direct
catalyst_measured_properties 1..*
String		 Key measured properties of the resulting catalyst
(e.g. BET surface area, sieve fraction, molar ratio).		 direct
storage_conditions * recommended
String
 Conditions under which the catalyst is stored (e.g. inert atmosphere, 4°C). direct
catalyst_support *
String		 Support material on which the active phase is deposited (e.g. Al2O3, SiO2). direct
solvent *
ChemicalEntity		 Solvent used in a process or sample preparation. direct
has_sample_pretreatment * recommended
SamplePretreatment		 Pre-treatment applied to the sample before a process or measurement. direct
evaluated_entity * recommended
EvaluatedEntity		 The slot to specify the Entity about which the DataGeneratingActivity produced information. DataGeneratingActivity
evaluated_activity * recommended
EvaluatedActivity		 The slot to specify the Activity about which the DataGeneratingActivity produced information. DataGeneratingActivity
realized_plan 1
PreparationMethod		 The PreparationMethod (protocol) realized in this Synthesis. DataGeneratingActivity
occurred_in 0..1
Surrounding		 The slot to specify the Surrounding in which an Activity took place. DataGeneratingActivity
id 1
Uriorcurie		 A slot to provide an URI for an entity within this schema. Activity
title *
String		 The slot to provide a title for the Activity. Activity
description *
String		 The slot to provide a description for the Activity. Activity
other_identifier *
Identifier		 The slot to provide a secondary identifier of the Activity. Activity
has_part *
Activity		 The slot to provide an Activity that is part of the Activity. Activity
had_input_entity 1..* recommended
Precursor		 The Precursor(s) consumed during this Synthesis. Activity
had_output_entity * recommended
CatalystSample		 The CatalystSample produced by this Synthesis. Activity
had_input_activity * recommended
Activity		 The slot to provide a previous Activity that informed the Activity by being causally via a shared participant. Activity
carried_out_by * recommended
Device		 Equipment or synthesis device used to carry out this preparation step.
Provide a Device instance (e.g. rotary evaporator, autoclave, furnace).		 Activity
has_qualitative_attribute * recommended
QualitativeAttribute
 The slot to relate a qualitative attribute to an EvaluatedEntity, EvaluatedActivity or AgenticEntity Activity
has_quantitative_attribute * recommended
QuantitativeAttribute		 The slot to relate a quantitative attribute to an EvaluatedEntity, EvaluatedActivity or AgenticEntity Activity
part_of *
Activity		 The slot to provide an Activity of which the Activity is a part. Activity
type 0..1
DefinedTerm		 This slot is described in more detail within the class in which it is used. ClassifierMixin
rdf_type 0..1 recommended
DefinedTerm		 The slot to specify the ontology class that is instantiated by an entity. ClassifierMixin

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self OBI:0000070
native coremeta4cat:Synthesis

LinkML Source

Direct

name: Synthesis
description: 'A DataGeneratingActivity in which a catalyst is prepared.


  The preparation protocol is linked via realized_plan using a

  PreparationMethod instance. Input materials (Precursors) are linked via

  had_input_entity. The resulting catalyst (CatalystSample) is linked via

  had_output_entity.


  The type of synthesis is further specified via rdf_type using an ontology

  term (e.g. a VOC4CAT preparation method term), following DCAT-AP-PLUS

  Pattern 3.'
from_schema: https://w3id.org/nfdi4cat/coremeta4cat
is_a: DataGeneratingActivity
slots:
- nominal_composition
- catalyst_measured_properties
- storage_conditions
- catalyst_support
- solvent
- has_sample_pretreatment
slot_usage:
  nominal_composition:
    name: nominal_composition
    required: true
  catalyst_measured_properties:
    name: catalyst_measured_properties
    required: true
  had_input_entity:
    name: had_input_entity
    description: The Precursor(s) consumed during this Synthesis.
    range: Precursor
    required: true
    multivalued: true
    inlined_as_list: true
  had_output_entity:
    name: had_output_entity
    description: The CatalystSample produced by this Synthesis.
    range: CatalystSample
    recommended: true
    multivalued: true
    inlined_as_list: true
  realized_plan:
    name: realized_plan
    description: The PreparationMethod (protocol) realized in this Synthesis.
    range: PreparationMethod
    required: true
  storage_conditions:
    name: storage_conditions
    recommended: true
  carried_out_by:
    name: carried_out_by
    description: 'Equipment or synthesis device used to carry out this preparation
      step.

      Provide a Device instance (e.g. rotary evaporator, autoclave, furnace).'
    range: Device
    multivalued: true
    inlined_as_list: true
class_uri: OBI:0000070

Induced

name: Synthesis
description: 'A DataGeneratingActivity in which a catalyst is prepared.


  The preparation protocol is linked via realized_plan using a

  PreparationMethod instance. Input materials (Precursors) are linked via

  had_input_entity. The resulting catalyst (CatalystSample) is linked via

  had_output_entity.


  The type of synthesis is further specified via rdf_type using an ontology

  term (e.g. a VOC4CAT preparation method term), following DCAT-AP-PLUS

  Pattern 3.'
from_schema: https://w3id.org/nfdi4cat/coremeta4cat
is_a: DataGeneratingActivity
slot_usage:
  nominal_composition:
    name: nominal_composition
    required: true
  catalyst_measured_properties:
    name: catalyst_measured_properties
    required: true
  had_input_entity:
    name: had_input_entity
    description: The Precursor(s) consumed during this Synthesis.
    range: Precursor
    required: true
    multivalued: true
    inlined_as_list: true
  had_output_entity:
    name: had_output_entity
    description: The CatalystSample produced by this Synthesis.
    range: CatalystSample
    recommended: true
    multivalued: true
    inlined_as_list: true
  realized_plan:
    name: realized_plan
    description: The PreparationMethod (protocol) realized in this Synthesis.
    range: PreparationMethod
    required: true
  storage_conditions:
    name: storage_conditions
    recommended: true
  carried_out_by:
    name: carried_out_by
    description: 'Equipment or synthesis device used to carry out this preparation
      step.

      Provide a Device instance (e.g. rotary evaporator, autoclave, furnace).'
    range: Device
    multivalued: true
    inlined_as_list: true
attributes:
  nominal_composition:
    name: nominal_composition
    description: Nominal elemental or chemical composition of the catalyst (e.g. 5wt%
      Pt/Al2O3).
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:nominal_composition
    alias: nominal_composition
    owner: Synthesis
    domain_of:
    - Synthesis
    range: string
    required: true
    multivalued: true
  catalyst_measured_properties:
    name: catalyst_measured_properties
    description: 'Key measured properties of the resulting catalyst

      (e.g. BET surface area, sieve fraction, molar ratio).'
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:catalyst_measured_properties
    alias: catalyst_measured_properties
    owner: Synthesis
    domain_of:
    - Synthesis
    range: string
    required: true
    multivalued: true
  storage_conditions:
    name: storage_conditions
    description: Conditions under which the catalyst is stored (e.g. inert atmosphere,
      4°C).
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: VOC4CAT:0008105
    alias: storage_conditions
    owner: Synthesis
    domain_of:
    - Synthesis
    range: string
    recommended: true
    multivalued: true
  catalyst_support:
    name: catalyst_support
    description: Support material on which the active phase is deposited (e.g. Al2O3,
      SiO2).
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: VOC4CAT:0008104
    alias: catalyst_support
    owner: Synthesis
    domain_of:
    - Synthesis
    range: string
    multivalued: true
  solvent:
    name: solvent
    description: Solvent used in a process or sample preparation.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: VOC4CAT:0007246
    alias: solvent
    owner: Synthesis
    domain_of:
    - Synthesis
    - NMRSpectroscopy
    - UVVisSpectroscopy
    - DynamicLightScattering
    range: ChemicalEntity
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_sample_pretreatment:
    name: has_sample_pretreatment
    description: Pre-treatment applied to the sample before a process or measurement.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    is_a: has_qualitative_attribute
    slot_uri: SIO:000008
    alias: has_sample_pretreatment
    owner: Synthesis
    domain_of:
    - Synthesis
    - Characterization
    range: SamplePretreatment
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  evaluated_entity:
    name: evaluated_entity
    description: The slot to specify the Entity about which the DataGeneratingActivity
      produced information.
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    is_a: had_input_entity
    slot_uri: prov:used
    alias: evaluated_entity
    owner: Synthesis
    domain_of:
    - DataGeneratingActivity
    range: EvaluatedEntity
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  evaluated_activity:
    name: evaluated_activity
    description: The slot to specify the Activity about which the DataGeneratingActivity
      produced information.
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    is_a: had_input_activity
    slot_uri: prov:wasInformedBy
    alias: evaluated_activity
    owner: Synthesis
    domain_of:
    - DataGeneratingActivity
    range: EvaluatedActivity
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  realized_plan:
    name: realized_plan
    description: The PreparationMethod (protocol) realized in this Synthesis.
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: prov:used
    alias: realized_plan
    owner: Synthesis
    domain_of:
    - DataGeneratingActivity
    range: PreparationMethod
    required: true
  occurred_in:
    name: occurred_in
    description: The slot to specify the Surrounding in which an Activity took place.
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: prov:atLocation
    alias: occurred_in
    owner: Synthesis
    domain_of:
    - DataGeneratingActivity
    range: Surrounding
  id:
    name: id
    description: A slot to provide an URI for an entity within this schema.
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    identifier: true
    alias: id
    owner: Synthesis
    domain_of:
    - Activity
    - AgenticEntity
    - Dataset
    - DefinedTerm
    - Document
    - Entity
    - LegalResource
    - LicenseDocument
    - Resource
    range: uriorcurie
    required: true
  title:
    name: title
    description: The slot to provide a title for the Activity.
    notes:
    - not in DCAT-AP
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: Synthesis
    domain_of:
    - QuantitativeRange
    - Activity
    - AgenticEntity
    - Any
    - Attribution
    - Catalogue
    - CatalogueRecord
    - ChecksumAlgorithm
    - Concept
    - ConceptScheme
    - DataService
    - Dataset
    - DatasetSeries
    - DefinedTerm
    - Distribution
    - Document
    - Entity
    - Frequency
    - Geometry
    - Identifier
    - LegalResource
    - LicenseDocument
    - LinguisticSystem
    - MediaType
    - MediaTypeOrExtent
    - PeriodOfTime
    - Plan
    - Policy
    - ProvenanceStatement
    - QualitativeAttribute
    - QuantitativeAttribute
    - Resource
    - RightsStatement
    - Role
    - Standard
    - SupportiveEntity
    - Surrounding
    - TimeInstant
    range: string
    multivalued: true
    inlined_as_list: true
  description:
    name: description
    description: The slot to provide a description for the Activity.
    notes:
    - not in DCAT-AP
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: dcterms:description
    alias: description
    owner: Synthesis
    domain_of:
    - QuantitativeRange
    - Activity
    - AgenticEntity
    - Any
    - Attribution
    - Catalogue
    - CatalogueRecord
    - ChecksumAlgorithm
    - Concept
    - ConceptScheme
    - DataService
    - Dataset
    - DatasetSeries
    - Distribution
    - Document
    - Entity
    - Frequency
    - Geometry
    - Identifier
    - LegalResource
    - LicenseDocument
    - LinguisticSystem
    - MediaType
    - MediaTypeOrExtent
    - PeriodOfTime
    - Plan
    - Policy
    - ProvenanceStatement
    - QualitativeAttribute
    - QuantitativeAttribute
    - Resource
    - RightsStatement
    - Role
    - Standard
    - SupportiveEntity
    - Surrounding
    - TimeInstant
    range: string
    multivalued: true
    inlined_as_list: true
  other_identifier:
    name: other_identifier
    description: The slot to provide a secondary identifier of the Activity.
    notes:
    - not in DCAT-AP
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: adms:identifier
    alias: other_identifier
    owner: Synthesis
    domain_of:
    - Activity
    - AgenticEntity
    - Dataset
    - Entity
    range: Identifier
    multivalued: true
    inlined_as_list: true
  has_part:
    name: has_part
    description: The slot to provide an Activity that is part of the Activity.
    notes:
    - not in DCAT-AP
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: dcterms:hasPart
    alias: has_part
    owner: Synthesis
    domain_of:
    - Activity
    - AgenticEntity
    - Catalogue
    - Entity
    range: Activity
    multivalued: true
    inlined_as_list: true
  had_input_entity:
    name: had_input_entity
    description: The Precursor(s) consumed during this Synthesis.
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: prov:used
    alias: had_input_entity
    owner: Synthesis
    domain_of:
    - Activity
    range: Precursor
    required: true
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  had_output_entity:
    name: had_output_entity
    description: The CatalystSample produced by this Synthesis.
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: prov:generated
    alias: had_output_entity
    owner: Synthesis
    domain_of:
    - Activity
    range: CatalystSample
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  had_input_activity:
    name: had_input_activity
    description: The slot to provide a previous Activity that informed the Activity
      by being causally via a shared participant.
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: prov:wasInformedBy
    alias: had_input_activity
    owner: Synthesis
    domain_of:
    - Activity
    range: Activity
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  carried_out_by:
    name: carried_out_by
    description: 'Equipment or synthesis device used to carry out this preparation
      step.

      Provide a Device instance (e.g. rotary evaporator, autoclave, furnace).'
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: prov:wasAssociatedWith
    alias: carried_out_by
    owner: Synthesis
    domain_of:
    - Activity
    range: Device
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_qualitative_attribute:
    name: has_qualitative_attribute
    description: The slot to relate a qualitative attribute to an EvaluatedEntity,
      EvaluatedActivity or AgenticEntity
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: dcterms:relation
    alias: has_qualitative_attribute
    owner: Synthesis
    domain_of:
    - Activity
    - AgenticEntity
    - Entity
    range: QualitativeAttribute
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_quantitative_attribute:
    name: has_quantitative_attribute
    description: The slot to relate a quantitative attribute to an EvaluatedEntity,
      EvaluatedActivity or AgenticEntity
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: dcterms:relation
    alias: has_quantitative_attribute
    owner: Synthesis
    domain_of:
    - Activity
    - AgenticEntity
    - Entity
    range: QuantitativeAttribute
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  part_of:
    name: part_of
    description: The slot to provide an Activity of which the Activity is a part.
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: dcterms:isPartOf
    alias: part_of
    owner: Synthesis
    domain_of:
    - Activity
    - AgenticEntity
    - Entity
    inverse: has_part
    range: Activity
    multivalued: true
    inlined_as_list: true
  type:
    name: type
    description: This slot is described in more detail within the class in which it
      is used.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: dcterms:type
    alias: type
    owner: Synthesis
    domain_of:
    - Agent
    - ClassifierMixin
    - Dataset
    - LicenseDocument
    range: DefinedTerm
    inlined: true
  rdf_type:
    name: rdf_type
    description: The slot to specify the ontology class that is instantiated by an
      entity.
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: rdf:type
    alias: rdf_type
    owner: Synthesis
    domain_of:
    - ClassifierMixin
    range: DefinedTerm
    recommended: true
    inlined: true
class_uri: OBI:0000070