Class: PolymerMixin

A LinkML mixin used to pass down properties common to all chemical substances that are composed of macromolecules of different kinds and which may be differentiated by composition, length, degree of branching etc..

NOTE: this is an abstract class and should not be instantiated directly

URI: coremeta4cat:class/PolymerMixin

 classDiagram
    class PolymerMixin
    click PolymerMixin href "../../classes/PolymerMixin/"
      ChemicalSubstanceMixin <|-- PolymerMixin
        click ChemicalSubstanceMixin href "../../classes/ChemicalSubstanceMixin/"


      PolymerMixin <|-- PolymerSample
        click PolymerSample href "../../classes/PolymerSample/"


      PolymerMixin : alternative_label

      PolymerMixin : composed_of





        PolymerMixin --> "* _recommended_" ChemicalEntity : composed_of
        click ChemicalEntity href "../../classes/ChemicalEntity/"



      PolymerMixin : has_amount





        PolymerMixin --> "* _recommended_" AmountOfSubstance : has_amount
        click AmountOfSubstance href "../../classes/AmountOfSubstance/"



      PolymerMixin : has_concentration





        PolymerMixin --> "* _recommended_" Concentration : has_concentration
        click Concentration href "../../classes/Concentration/"



      PolymerMixin : has_density





        PolymerMixin --> "* _recommended_" Density : has_density
        click Density href "../../classes/Density/"



      PolymerMixin : has_mass





        PolymerMixin --> "* _recommended_" Mass : has_mass
        click Mass href "../../classes/Mass/"



      PolymerMixin : has_ph_value





        PolymerMixin --> "* _recommended_" PHValue : has_ph_value
        click PHValue href "../../classes/PHValue/"



      PolymerMixin : has_physical_state





        PolymerMixin --> "0..1" PhysicalStateEnum : has_physical_state
        click PhysicalStateEnum href "../../enums/PhysicalStateEnum/"



      PolymerMixin : has_pressure





        PolymerMixin --> "* _recommended_" Pressure : has_pressure
        click Pressure href "../../classes/Pressure/"



      PolymerMixin : has_temperature





        PolymerMixin --> "* _recommended_" Temperature : has_temperature
        click Temperature href "../../classes/Temperature/"



      PolymerMixin : has_volume





        PolymerMixin --> "* _recommended_" Volume : has_volume
        click Volume href "../../classes/Volume/"

Inheritance

MaterialisticMixin
- ChemicalSubstanceMixin
  - PolymerMixin

Slots

Name	Cardinality and Range	Description	Inheritance
has_concentration	* recommended Concentration	The slot to provide the Concentration of a ChemicalSubstance.	ChemicalSubstanceMixin
has_ph_value	* recommended PHValue	The slot to provide the PHValue of a ChemicalSubstance.	ChemicalSubstanceMixin
composed_of	* recommended ChemicalEntity	The slot to provide the chemical entities of which a ChemicalSubstance is composed of.	ChemicalSubstanceMixin
has_amount	* recommended AmountOfSubstance	The slot to provide the AmountConcentration of a ChemicalSubstance.	ChemicalSubstanceMixin
alternative_label	0..1 String	The slot to specify an alternative label, name or title for a MaterialEntity.	MaterialisticMixin
has_physical_state	0..1 PhysicalStateEnum	The slot to specify the physical state of a MaterialEntity.	MaterialisticMixin
has_temperature	* recommended Temperature	The slot to provide the Temperature of a MaterialEntity or an Activity, whereas the temperature of the Activity is ontologically rooted in the temperature of the material entities that participate in the Activity.	MaterialisticMixin
has_mass	* recommended Mass	The slot to provide the Mass of a MaterialEntity.	MaterialisticMixin
has_volume	* recommended Volume	The slot to provide the Volume of a MaterialEntity.	MaterialisticMixin
has_density	* recommended Density	The slot to provide the Density of a MaterialEntity.	MaterialisticMixin
has_pressure	* recommended Pressure	The slot to provide data about the pressure of a MaterialEntity or an Activity, whereas the Pressure of an Activity is ontologically a quality borne by the material entities participating in the Activity.	MaterialisticMixin

Mixin Usage

mixed into	description
PolymerSample	A SubstanceSample derived from a Polymer.

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nfdi4cat/coremeta4cat

Mappings

Mapping Type	Mapped Value
self	coremeta4cat:PolymerMixin
native	coremeta4cat:PolymerMixin

LinkML Source

Direct

name: PolymerMixin
description: A LinkML mixin used to pass down properties common to all chemical substances
  that are composed of macromolecules of different kinds and which may be differentiated
  by composition, length, degree of branching etc..
from_schema: https://w3id.org/nfdi4cat/coremeta4cat
is_a: ChemicalSubstanceMixin
abstract: true
mixin: true

Induced

name: PolymerMixin
description: A LinkML mixin used to pass down properties common to all chemical substances
  that are composed of macromolecules of different kinds and which may be differentiated
  by composition, length, degree of branching etc..
from_schema: https://w3id.org/nfdi4cat/coremeta4cat
is_a: ChemicalSubstanceMixin
abstract: true
mixin: true
attributes:
  has_concentration:
    name: has_concentration
    description: The slot to provide the Concentration of a ChemicalSubstance.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    alias: has_concentration
    owner: PolymerMixin
    domain_of:
    - ChemicalSubstanceMixin
    range: Concentration
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_ph_value:
    name: has_ph_value
    description: The slot to provide the PHValue of a ChemicalSubstance.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    alias: has_ph_value
    owner: PolymerMixin
    domain_of:
    - ChemicalSubstanceMixin
    range: PHValue
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  composed_of:
    name: composed_of
    description: The slot to provide the chemical entities of which a ChemicalSubstance
      is composed of.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    close_mappings:
    - AFX:0000940
    rank: 1000
    is_a: has_part
    slot_uri: BFO:0000051
    alias: composed_of
    owner: PolymerMixin
    domain_of:
    - ChemicalSubstanceMixin
    range: ChemicalEntity
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_amount:
    name: has_amount
    description: The slot to provide the AmountConcentration of a ChemicalSubstance.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    alias: has_amount
    owner: PolymerMixin
    domain_of:
    - ChemicalSubstanceMixin
    range: AmountOfSubstance
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  alternative_label:
    name: alternative_label
    description: The slot to specify an alternative label, name or title for a MaterialEntity.
    todos:
    - Should probably rather declared on Entity or in some common metadata mixin instead.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: skos:altLabel
    alias: alternative_label
    owner: PolymerMixin
    domain_of:
    - MaterialisticMixin
    range: string
  has_physical_state:
    name: has_physical_state
    description: The slot to specify the physical state of a MaterialEntity.
    todos:
    - Find out how to make this a subproperty of has_qualitative_attribute, as it
      currently throws the error 'physical_state enumerations cannot be inlined' due
      to the fact that we are using an enum here.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: SIO:000008
    alias: has_physical_state
    owner: PolymerMixin
    domain_of:
    - MaterialisticMixin
    range: PhysicalStateEnum
    multivalued: false
    inlined: false
  has_temperature:
    name: has_temperature
    description: The slot to provide the Temperature of a MaterialEntity or an Activity,
      whereas the temperature of the Activity is ontologically rooted in the temperature
      of the material entities that participate in the Activity.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    alias: has_temperature
    owner: PolymerMixin
    domain_of:
    - MaterialisticMixin
    - ChemicalReaction
    range: Temperature
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_mass:
    name: has_mass
    description: The slot to provide the Mass of a MaterialEntity.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    alias: has_mass
    owner: PolymerMixin
    domain_of:
    - MaterialisticMixin
    range: Mass
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_volume:
    name: has_volume
    description: The slot to provide the Volume of a MaterialEntity.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    alias: has_volume
    owner: PolymerMixin
    domain_of:
    - MaterialisticMixin
    range: Volume
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_density:
    name: has_density
    description: The slot to provide the Density of a MaterialEntity.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    alias: has_density
    owner: PolymerMixin
    domain_of:
    - MaterialisticMixin
    range: Density
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_pressure:
    name: has_pressure
    description: The slot to provide data about the pressure of a MaterialEntity or
      an Activity, whereas the Pressure of an Activity is ontologically a quality
      borne by the material entities participating in the Activity.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    alias: has_pressure
    owner: PolymerMixin
    domain_of:
    - MaterialisticMixin
    - ChemicalReaction
    range: Pressure
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true