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Class: GCMS

Gas chromatography-mass spectrometry for volatile compound identification and quantification.

URI: CHMO:0000497

 classDiagram
    class GCMS
    click GCMS href "../../classes/GCMS/"
      ChromatographyMixin <|-- GCMS
        click ChromatographyMixin href "../../classes/ChromatographyMixin/"
      MassRangeMixin <|-- GCMS
        click MassRangeMixin href "../../classes/MassRangeMixin/"
      CharacterizationTechnique <|-- GCMS
        click CharacterizationTechnique href "../../classes/CharacterizationTechnique/"

      GCMS : acquisition_mode

      GCMS : carrier_gas

      GCMS : carrier_gas_purity

      GCMS : column_type

      GCMS : description

      GCMS : eluent

      GCMS : external_standard

      GCMS : flow_rate

      GCMS : heating_procedure

      GCMS : heating_ramp

      GCMS : injection_volume

      GCMS : inlet_temperature

      GCMS : internal_standard

      GCMS : maximum_oven_temperature

      GCMS : minimum_oven_temperature

      GCMS : mz_maximum

      GCMS : mz_minimum

      GCMS : rdf_type





        GCMS --> "0..1 _recommended_" DefinedTerm : rdf_type
        click DefinedTerm href "../../classes/DefinedTerm/"



      GCMS : solvent_delay

      GCMS : split_ratio

      GCMS : title

      GCMS : trace_ion_detection

      GCMS : type





        GCMS --> "0..1" DefinedTerm : type
        click DefinedTerm href "../../classes/DefinedTerm/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
carrier_gas *
String		 Carrier gas used in a process (e.g. in GC analysis or ALD deposition). direct
carrier_gas_purity *
String		 Purity grade of the carrier gas used in GC. direct
inlet_temperature *
Float		 GC inlet temperature. direct
minimum_oven_temperature *
Float		 Minimum oven temperature in GC temperature programme. direct
maximum_oven_temperature *
Float		 Maximum oven temperature in GC temperature programme. direct
heating_ramp *
Float		 Temperature ramp rate in GC oven programme. direct
heating_procedure *
String		 Description of the heating procedure applied. direct
acquisition_mode *
String		 Mass spectrometer acquisition mode (e.g. full scan, SIM, SRM). direct
solvent_delay *
Float		 Solvent delay time before MS acquisition begins. direct
trace_ion_detection *
String		 Trace ion detection setting or threshold. direct
split_ratio *
Float		 Split ratio at the GC injector. direct
column_type *
String		 Type of chromatographic column used. ChromatographyMixin
eluent *
String		 Eluent or mobile phase used in chromatography. ChromatographyMixin
flow_rate *
Float		 Flow rate of a fluid or gas. ChromatographyMixin
injection_volume *
Float		 Volume injected in a chromatographic or mass spectrometric experiment. ChromatographyMixin
external_standard *
String		 External standard used for quantification or calibration. ChromatographyMixin
internal_standard *
String		 Internal standard used for quantification or calibration. ChromatographyMixin
mz_minimum *
Float		 Minimum m/z value in the mass scan range. MassRangeMixin
mz_maximum *
Float		 Maximum m/z value in the mass scan range. MassRangeMixin
title 0..1
String		 This slot is described in more detail within the class in which it is used. Plan
description 0..1
String		 This slot is described in more detail within the class in which it is used. Plan
type 0..1
DefinedTerm		 This slot is described in more detail within the class in which it is used. ClassifierMixin
rdf_type 0..1 recommended
DefinedTerm		 The slot to specify the ontology class that is instantiated by an entity. ClassifierMixin

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/nfdi4cat/coremeta4cat

Mappings

Mapping Type Mapped Value
self CHMO:0000497
native coremeta4cat:GCMS

LinkML Source

Direct

name: GCMS
description: Gas chromatography-mass spectrometry for volatile compound identification
  and quantification.
from_schema: https://w3id.org/nfdi4cat/coremeta4cat
is_a: CharacterizationTechnique
mixins:
- ChromatographyMixin
- MassRangeMixin
slots:
- carrier_gas
- carrier_gas_purity
- inlet_temperature
- minimum_oven_temperature
- maximum_oven_temperature
- heating_ramp
- heating_procedure
- acquisition_mode
- solvent_delay
- trace_ion_detection
- split_ratio
class_uri: CHMO:0000497

Induced

name: GCMS
description: Gas chromatography-mass spectrometry for volatile compound identification
  and quantification.
from_schema: https://w3id.org/nfdi4cat/coremeta4cat
is_a: CharacterizationTechnique
mixins:
- ChromatographyMixin
- MassRangeMixin
attributes:
  carrier_gas:
    name: carrier_gas
    description: Carrier gas used in a process (e.g. in GC analysis or ALD deposition).
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:carrier_gas
    alias: carrier_gas
    owner: GCMS
    domain_of:
    - AtomicLayerDeposition
    - ElementalAnalysis
    - ElectroSprayIonizationMassSpectrometry
    - GCMS
    range: string
    multivalued: true
  carrier_gas_purity:
    name: carrier_gas_purity
    description: Purity grade of the carrier gas used in GC.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:carrier_gas_purity
    alias: carrier_gas_purity
    owner: GCMS
    domain_of:
    - GCMS
    range: string
    multivalued: true
  inlet_temperature:
    name: inlet_temperature
    description: GC inlet temperature.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:inlet_temperature
    alias: inlet_temperature
    owner: GCMS
    domain_of:
    - GCMS
    range: float
    multivalued: true
    unit:
      ucum_code: Cel
  minimum_oven_temperature:
    name: minimum_oven_temperature
    description: Minimum oven temperature in GC temperature programme.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:minimum_oven_temperature
    alias: minimum_oven_temperature
    owner: GCMS
    domain_of:
    - GCMS
    range: float
    multivalued: true
    unit:
      ucum_code: Cel
  maximum_oven_temperature:
    name: maximum_oven_temperature
    description: Maximum oven temperature in GC temperature programme.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:maximum_oven_temperature
    alias: maximum_oven_temperature
    owner: GCMS
    domain_of:
    - GCMS
    range: float
    multivalued: true
    unit:
      ucum_code: Cel
  heating_ramp:
    name: heating_ramp
    description: Temperature ramp rate in GC oven programme.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:heating_ramp
    alias: heating_ramp
    owner: GCMS
    domain_of:
    - GCMS
    range: float
    multivalued: true
    unit:
      ucum_code: Cel/min
  heating_procedure:
    name: heating_procedure
    description: Description of the heating procedure applied.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:heating_procedure
    alias: heating_procedure
    owner: GCMS
    domain_of:
    - TemperatureProgramMixin
    - GCMS
    range: string
    multivalued: true
  acquisition_mode:
    name: acquisition_mode
    description: Mass spectrometer acquisition mode (e.g. full scan, SIM, SRM).
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:acquisition_mode
    alias: acquisition_mode
    owner: GCMS
    domain_of:
    - GCMS
    range: string
    multivalued: true
  solvent_delay:
    name: solvent_delay
    description: Solvent delay time before MS acquisition begins.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:solvent_delay
    alias: solvent_delay
    owner: GCMS
    domain_of:
    - GCMS
    range: float
    multivalued: true
    unit:
      ucum_code: min
  trace_ion_detection:
    name: trace_ion_detection
    description: Trace ion detection setting or threshold.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:trace_ion_detection
    alias: trace_ion_detection
    owner: GCMS
    domain_of:
    - GCMS
    range: string
    multivalued: true
  split_ratio:
    name: split_ratio
    description: Split ratio at the GC injector.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:split_ratio
    alias: split_ratio
    owner: GCMS
    domain_of:
    - GCMS
    range: float
    multivalued: true
  column_type:
    name: column_type
    description: Type of chromatographic column used.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:column_type
    alias: column_type
    owner: GCMS
    domain_of:
    - ChromatographyMixin
    range: string
    multivalued: true
  eluent:
    name: eluent
    description: Eluent or mobile phase used in chromatography.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: AFRL:0000011
    alias: eluent
    owner: GCMS
    domain_of:
    - ChromatographyMixin
    range: string
    multivalued: true
  flow_rate:
    name: flow_rate
    description: Flow rate of a fluid or gas.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:flow_rate
    alias: flow_rate
    owner: GCMS
    domain_of:
    - FlameSprayPyrolysis
    - ChromatographyMixin
    - DRIFTS
    - ElectroSprayIonizationMassSpectrometry
    range: float
    multivalued: true
    unit:
      ucum_code: mL/min
  injection_volume:
    name: injection_volume
    description: Volume injected in a chromatographic or mass spectrometric experiment.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:injection_volume
    alias: injection_volume
    owner: GCMS
    domain_of:
    - ChromatographyMixin
    range: float
    multivalued: true
    unit:
      ucum_code: uL
  external_standard:
    name: external_standard
    description: External standard used for quantification or calibration.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:external_standard
    alias: external_standard
    owner: GCMS
    domain_of:
    - ChromatographyMixin
    range: string
    multivalued: true
  internal_standard:
    name: internal_standard
    description: Internal standard used for quantification or calibration.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: coremeta4cat:internal_standard
    alias: internal_standard
    owner: GCMS
    domain_of:
    - ChromatographyMixin
    range: string
    multivalued: true
  mz_minimum:
    name: mz_minimum
    description: Minimum m/z value in the mass scan range.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: AFR:0002652
    alias: mz_minimum
    owner: GCMS
    domain_of:
    - MassRangeMixin
    range: float
    multivalued: true
  mz_maximum:
    name: mz_maximum
    description: Maximum m/z value in the mass scan range.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: AFR:0002653
    alias: mz_maximum
    owner: GCMS
    domain_of:
    - MassRangeMixin
    range: float
    multivalued: true
  title:
    name: title
    description: This slot is described in more detail within the class in which it
      is used.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: GCMS
    domain_of:
    - Activity
    - AgenticEntity
    - Any
    - Attribution
    - Catalogue
    - CatalogueRecord
    - ChecksumAlgorithm
    - Concept
    - ConceptScheme
    - DataService
    - Dataset
    - DatasetSeries
    - DefinedTerm
    - Distribution
    - Document
    - Entity
    - Frequency
    - Geometry
    - Identifier
    - LegalResource
    - LicenseDocument
    - LinguisticSystem
    - MediaType
    - MediaTypeOrExtent
    - PeriodOfTime
    - Plan
    - Policy
    - ProvenanceStatement
    - QualitativeAttribute
    - QuantitativeAttribute
    - Resource
    - RightsStatement
    - Role
    - Standard
    - SupportiveEntity
    - Surrounding
    - TimeInstant
    range: string
  description:
    name: description
    description: This slot is described in more detail within the class in which it
      is used.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: dcterms:description
    alias: description
    owner: GCMS
    domain_of:
    - Activity
    - AgenticEntity
    - Any
    - Attribution
    - Catalogue
    - CatalogueRecord
    - ChecksumAlgorithm
    - Concept
    - ConceptScheme
    - DataService
    - Dataset
    - DatasetSeries
    - Distribution
    - Document
    - Entity
    - Frequency
    - Geometry
    - Identifier
    - LegalResource
    - LicenseDocument
    - LinguisticSystem
    - MediaType
    - MediaTypeOrExtent
    - PeriodOfTime
    - Plan
    - Policy
    - ProvenanceStatement
    - QualitativeAttribute
    - QuantitativeAttribute
    - Resource
    - RightsStatement
    - Role
    - Standard
    - SupportiveEntity
    - Surrounding
    - TimeInstant
    range: string
  type:
    name: type
    description: This slot is described in more detail within the class in which it
      is used.
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: dcterms:type
    alias: type
    owner: GCMS
    domain_of:
    - Agent
    - ClassifierMixin
    - Dataset
    - LicenseDocument
    range: DefinedTerm
    inlined: true
  rdf_type:
    name: rdf_type
    description: The slot to specify the ontology class that is instantiated by an
      entity.
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/nfdi4cat/coremeta4cat
    rank: 1000
    slot_uri: rdf:type
    alias: rdf_type
    owner: GCMS
    domain_of:
    - ClassifierMixin
    range: DefinedTerm
    recommended: true
    inlined: true
class_uri: CHMO:0000497